Hello Bart Welch,
Settings defined for the RadControls for ASP.NET Ajax in the web.config are applied to the whole website globally. If you wish to have skins applied on the publicly facing part of the website would be better to set those settings in your theme as described in this KB article
. The other option would be to edit the control template of the Generic Content Designer control and set the RadEditor to use the default Sitefinity settings (~/Sitefinity/Admin/ControlTemplates/Generic_Content/GenericContentDesigner.ascx)
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